PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02992.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 713aa    MW: 78582.6 Da    PI: 7.9563
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02992.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-24112213199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD+
  Rsa1.0_02992.1_g00004.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDS 195
                              89****************************987555555..8******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF   +++++ l+v+++r+
  Rsa1.0_02992.1_g00004.1 196 IVFL--RSETGDLCVGIRRA 213
                              ****..4588999****996 PP

2Auxin_resp115.54.5e-38290373183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Rsa1.0_02992.1_g00004.1 290 AVARAACGQPFEVVYYPRASTPEFCVKASDVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 373
                              56788999**************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-37104215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-29107213IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-21111212No hitNo description
SMARTSM010191.9E-21112214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098112214IPR003340B3 DNA binding domain
PfamPF023627.6E-22112213IPR003340B3 DNA binding domain
PfamPF065071.9E-32291373IPR010525Auxin response factor
PROSITE profilePS5174519.407600688IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEQERSLDPQ LWHACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA  60
SVKFLADSET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDVAVNEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL IAGDSIVFLR SETGDLCVGI RRAKRGGLGS NGLGSDNNNG NSNNNNPYPG  240
FSGFLRDDEI TASKLMMMKR NATAAGGGGG NVSDANAPGG RVRVEAVAEA VARAACGQPF  300
EVVYYPRAST PEFCVKASDV RSAMRIRWCS GMRFKMAFET EDSSRISWFM GTVSAVQVAD  360
PIRWPNSPWR LLQVAWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPR KKLRIPQPFD  420
FPFDGTKFPV FSPGFAAGGN NGESMCYLSN DNNNNNTAPA GIQGARQAQQ LFGSPSPSLL  480
SDLNLNSFHS GNKLQQSSSS PAMFLSGFNP RHHHFDNIVV PRQARDAEFN NNNISCSLTI  540
GNPGLVQDKK KSGSVKTHQF LLFGQPILTE QQVMNRKREE AEKEEKGGLT WNYGLQGLET  600
GHCKVFMESE DVGRTLDLSV IGSYQELYRK LAEMFGIEER SDLLTHVVYR DANGVTKRIG  660
DEPFSNFMRS TKRLTIKMDI GGDNLRKTWI TGIRNGENGM DSSTKTGQLS IFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-711039422353Auxin response factor 1
4ldy_B2e-711039422353Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794750.0JN979475.1 Brassica rapa subsp. pekinensis auxin response factor 10 (ARF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103679.10.0PREDICTED: auxin response factor 10
RefseqXP_009103678.10.0PREDICTED: auxin response factor 10
SwissprotQ9SKN50.0ARFJ_ARATH; Auxin response factor 10
TrEMBLH9B4D60.0H9B4D6_BRARP; Auxin response factor
STRINGBra011955.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10